PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G289800.1
Common NameB456_004G289800, LOC105792983
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 227aa    MW: 24971.7 Da    PI: 5.1244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G289800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-1850100155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++ +g
  Gorai.004G289800.1  50 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSVKG 100
                         68*****998.**********843...6**********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1250100IPR001471AP2/ERF domain
SMARTSM003805.6E-3551114IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2151109IPR016177DNA-binding domain
PROSITE profilePS5103222.61651108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3151109IPR001471AP2/ERF domain
CDDcd000182.01E-3152110No hitNo description
PRINTSPR003671.6E-95263IPR001471AP2/ERF domain
PRINTSPR003671.6E-97490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTETESSSNS FSSPPLSPSS PGSTHSRTNS ALNSTNSLKV KRTRDSSKHP VYHGVRMRNW  60
GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSVKG SSAILNFPEL ANSLPRPVSL  120
APRDVQAAAA KAAQMERFDS HPSSSSTLSS SSSLSSLVSE MDLSSGSDEL SEIVELPSLE  180
TSYESVELKD EFMFIDSVDG LFYTPPWLQS LEDCRYSFEE NLLWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1652113668ATERF1
3gcc_A2e-1652113668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477326.11e-163PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD36e-75DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2RCA21e-163A0A0D2RCA2_G
STRINGVIT_04s0008g03400.t012e-80(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-68ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]